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Genomic sequences for the rice genomes
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Genome of 93-11 FTP1 FTP2 |
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Genome of Syngenta FTP1 FTP2 |
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Superscaffold of 93-11 FTP1 FTP2 |
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Superscaffold of Syngenta FTP1 FTP2 |
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Scaffold of 93-11 FTP1 FTP2 |
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Scaffold of Syngenta FTP1 FTP2 |
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Contig of 93-11 FTP1 FTP2 |
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Contig of Syngenta FTP1 FTP2 |
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Pseudomolecules
of IRGSP japonica (build 4) FTP1 FTP2 |
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Chromosome
of Syngenta FTP1 FTP2 |
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Chromosome
of 93-11 FTP1 FTP2 |
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Annotation data for the rice genomes
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Glean gene annotation(gff)
93-11
Syngenta |
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Glean gene cds(fasta)
93-11
Syngenta |
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Glean gene protein(fasta)
93-11
Syngenta |
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FgeneSH genes
93-11
Syngenta |
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Repeats
93-11
Syngenta |
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CpGisland
93-11
Syngenta |
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Promoter
93-11
Syngenta |
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Markers
93-11
Syngenta |
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BAC ends
93-11
Syngenta |
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Repeats
93-11
Syngenta |
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nr-KOME cDNAs Syngenta
cDNAs |
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Pre-publication gene sets (Re-annotation
of the rice genomes by selective pre-masking of intergenic
transposable elements) |
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BGF genes
93-11
Syngenta IRGSP
japonica (build 4) |
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Fgenesh genes
93-11
Syngenta IRGSP
japonica (build 4) |
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Pre-publication gene sets (Improved gene
annotation of the rice (Oryza sativa) genomes, submited to BMC
Genomics) |
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Repeats
93-11
Syngenta IRGSP
japonica |
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GLEAN genes
93-11
Syngenta IRGSP
japonica |
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ncRNA genes
93-11
Syngenta IRGSP
japonica |
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Homolog among 93-11, PA64s and Syngenta subspecies
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Homology region FTP1 |
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Conserve region FTP1 |
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SNP FTP1 |
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SNPs between indica and japonica subspecies
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93-11 vs Syngenta Genome
alignment SNP/Indel
information |
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93-11 vs IRGSP Genome
alignment SNP/Indel
information |
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Instruction of file formats Readme |
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Transcriptome Data
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SAGE Instruction SAGE
data Potential
origin |
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RNA-Seq reads:
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Short reads of indica rice transcriptome through high-throughput RNA sequencing Single-End Paired-end |
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DGEP tag:
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DGEP (digital gene expression profiling) tag of indica rice transcriptome via high-throughput RNA sequencing FTP |
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Small RNA:
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Small RNA reads of indica rice transcriptome by high-throughput RNA sequencing FTP |
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Transcript units (TUs) defined by the RNA-Seq reads |
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Genome-wide survey of alternative splicing in rice by RNA-Seq reads |
